PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g020660.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 313aa    MW: 35558.7 Da    PI: 4.6066
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g020660.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.3e-115331442
                        HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
                         kR++ + KK +ELS+LCd+++++ii+ +
  Sopim11g020660.0.1  5 VKRKASLVKKISELSILCDIKACMIIYDE 33
                        7*************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.232135IPR002100Transcription factor, MADS-box
SMARTSM004320.0081243IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-13361IPR002100Transcription factor, MADS-box
PfamPF003191.6E-9535IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNTSVKRKAS LVKKISELSI LCDIKACMII YDEGNSNCEM WPNEVKELIN VYKDQPFEGR  60
TKRGKTLSNY FKDEIKVEKD LDSRFDYFEN DEKKKADAIN VEKYPTWDSR FDYLSQKEIQ  120
NLVGVISKRM ENAKGRIELL KSMNGSCSLS HRQQIWDYNN LMNQTSPWPI SDHVNSFNNF  180
FQSNIGVNSM MESENWLAND EIGSSLAMHP MGNNYGIIDS STTMMQPMGN NEIGSSSTMQ  240
QPMFQYPFMY NGSTHVIGSS STMQPPMGQY PFTNNDDSTG DIGSSSMQPI GNNNEIGPMD  300
NDSTYDSCTF YY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250617.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLK4D7180.0K4D718_SOLLC; Uncharacterized protein
STRINGSolyc11g020660.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-13M-type_MADS family protein